|We have collected a compendium of 50 experimentally determined miRNA taregt genes (22 independent studies, 41 unique miRNAs) from transcriptome profiles where the expression of a miRNA was perturbed and the resultnant differentially expressed genes were identified. The miRNAs perturbed include:
We used this compendium to assess the performance of methods to infer miRNA mediated regulation . The compendium can be donwloaded as a comma separated file (CSV) file:
The CSV file contians 5,129 entries with three columns:
This file is provided in the CSV format to facilitate the use of Microsoft Excel or a comparable spreadsheet application to sort and filter the entries.
- miRNA - the perturbed miRNA name.
- PMID - the PubMed ID for the publication describing the exeriment.
- Entrez Gene ID - the NCBI Entrez Gene identifier for the gene experimentally demonstrated to be regulated by the miRNA.